A comprehensive dataset combining all parameter tables into a single long-format table. Contains information about infectious diseases in animal populations, including: transmission parameters, pathogen survival, diagnostic tests, prevalence data, and control measures. The source table for each entry is identified in the "ParameterType" column.
Format
A data frame with 41 variables:
- parameter
Parameter measured
- if_other
Additional parameter specifications
- unit
Units of measurement
- model_type
Model classification (e.g., SI, SIR)
- model_mixing
Mixing pattern in the population
- model_scale
Scale of the model
- study_type
Study type
- pathogen
Name of the infectious agent
- variant_strain
Specific variant or strain
- host
Host species
- host_type
Type of host
- host_breed
Specific breed of host
- host_age
Age or age group of hosts
- host_other
Additional host characteristics
- vaccine_seeder
Vaccination status of seeder/inoculated animals
- vaccine_contact
Vaccination status of contact animals
- vaccine
Type of vaccine used if applicable
- value
Numeric value of the parameter
- lower_cl
Lower bound of confidence/credible interval
- upper_cl
Upper bound of confidence/credible interval
- estimation_type
Statistical approach used (Frequentist/Bayesian)
- estimation_method
Method used for estimation
- remarks
Additional notes or comments
- ref_short
Short reference: source author and year
- year
Year of publication
- ref
Reference: source doi or url
- filled_by
Data entry person identifier
- parameter_type
Category of parameter
- inoculated_contact
Inoculation or contact status
- material
Type of material or medium where survival was measured
- test_type
Type of diagnostic test used
- sample_type
Type of biological sample used
- time_period
Time period of the study
- country
Country or region where data was collected
- sampling_purpose
Purpose of the sampling conducted
- info_level
Level of information detail
- plan_implemented
Whether a control plan is implemented
- plan_voluntary_compulsary
Voluntary or compulsary plan
- plan_coverage
Geographical scope of the plan
- country_disease_status
Disease status classification
- plan_type
Type of control plan
- last_updated
Date of last control plan update