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Number of parametra entries by pathogen and parameter. The numbers in parentheses indicate the count of studies where these entries were collected. Total number of studies: 414

Sensitivity (57)

Specificity (46)

Incubation Period (19)

Infectious Period (76)

Latent Period (57)

Shape (5)

Fomites Transmission (5)

Survival/Disinfection (39)

Global Prevalence (1)

Herd Prevalence (73)

Basic Reproduction Number (80)

Probability Of Reactivation Of Latent Infection (2)

Probability Of Transmission Between Farms (1)

Probability Of Transmission Via Direct Contact (11)

Probability Of Transmission Via Indirect Contact (14)

Reproduction Number (18)

Transmission Parameter (126)

Within Herd Prevalence (39)

Other (56)

Not Available (9)

Diagnostic_test (62)

Infectious_latent_incuba_period (94)

Pathogen_survival (44)

Regional_prevalence (80)

Transmission (177)

Within_herd_prevalence (39)

Not Available

African Swine Fever (36)

15

8

0

23

7

29

0

6

0

0

32

0

0

2

7

0

36

0

21

0

Avian Influenza (68)

15

15

32

91

58

0

0

3

0

0

190

0

1

6

6

0

160

0

0

0

Bluetongue (4)

3

3

0

0

0

0

0

0

0

0

15

0

0

0

0

0

0

1

4

0

Bovine Respiratory Syncytial Virus (20)

3

2

2

0

0

0

0

2

0

9

11

0

0

0

0

0

9

1

2

0

Bovine Tuberculosis (26)

65

39

0

0

6

0

0

2

1

9

12

0

0

0

0

6

15

7

11

4

Bovine Viral Diarrhoea Virus (23)

7

7

0

3

0

0

3

0

0

8

3

0

0

0

1

0

7

7

0

1

Campylobacter (26)

18

17

0

3

2

0

0

2

0

5

0

0

0

0

0

0

12

5

7

0

Classical Swine Fever (7)

2

2

0

2

1

2

0

0

0

0

10

0

0

2

2

5

13

0

0

0

Contagious agalactia (7)

0

0

0

0

0

0

0

1

0

5

0

0

0

0

0

0

0

0

0

1

Coxiella burnetii (21)

4

3

0

5

0

0

0

2

0

11

0

0

0

0

0

1

15

12

0

0

E. coli (23)

99

90

0

3

3

0

0

1

0

0

18

0

0

4

8

1

51

0

22

0

Foot and Mouth Disease (14)

13

11

0

13

3

0

0

3

0

0

6

0

0

0

0

19

8

0

3

0

Hepatitis E (25)

2

2

0

36

29

1

0

2

0

17

25

0

0

0

0

7

32

94

1

0

Infectious Bovine Rhinotracheitis (14)

3

2

0

1

0

0

0

4

0

2

1

1

0

1

0

0

0

3

0

1

Multiple (5)

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

5

0

Paratuberculosis (28)

111

101

0

2

3

0

0

4

0

8

22

1

0

2

1

0

47

0

10

1

Peste des Petits Ruminants (9)

10

3

2

1

0

0

0

1

0

0

4

0

0

0

0

2

3

0

1

0

PRRS (26)

11

8

0

2

3

0

4

1

0

2

20

0

0

11

16

13

4

10

15

0

S. aureus (1)

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

1

0

Salmonella (23)

11

8

0

2

2

0

0

4

0

5

30

0

0

0

0

0

7

27

5

1

Sheep and Goat Pox (3)

0

0

1

2

1

2

0

0

0

0

1

0

0

0

0

2

3

0

0

0

Swine Influenza (19)

6

2

0

16

10

0

0

2

0

4

2

0

0

0

0

16

43

8

0

0