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Number of parametra entries by pathogen and parameter. The numbers in parentheses indicate the count of studies where these entries were collected. Total number of studies: 411

Global Prevalence (1)

Herd Prevalence (73)

Within Herd Prevalence (39)

Pathogen Survival/Disinfection (39)

Probability Fomite Testing Positive (1)

Transmission On Fomites (4)

Sensitivity (57)

Specificity (46)

Incubation Period (18)

Infectious Period (74)

Latent Period (56)

Shape (4)

Basic Reproduction Number (79)

Probability Of Reactivation Of Latent Infection (2)

Probability Of Transmission Between Farms (1)

Probability Of Transmission Via Direct Contact (11)

Probability Of Transmission Via Indirect Contact (14)

Reproduction Number (17)

Transmission Parameter (124)

Other (65)

Prevalence (101)

Survival (44)

Tests (62)

Time Intervals (92)

Transmission (175)

African Swine Fever (36)

0

0

0

6

0

0

15

8

0

23

7

29

32

0

0

2

7

0

36

21

Avian Influenza (68)

0

0

0

3

0

0

15

15

32

91

58

0

190

0

1

6

6

0

160

0

Bluetongue (4)

0

0

1

0

0

0

3

3

0

0

0

0

15

0

0

0

0

0

0

4

Bovine Respiratory Syncytial Virus (20)

0

9

1

2

0

0

3

2

2

0

0

0

11

0

0

0

0

0

9

2

Bovine Tuberculosis (26)

1

9

7

2

0

0

65

39

0

0

6

0

12

0

0

0

0

6

15

15

Bovine Viral Diarrhoea Virus (23)

0

8

7

0

3

0

7

7

0

3

0

0

3

0

0

0

1

0

7

1

Campylobacter (26)

0

5

5

2

0

0

18

17

0

3

2

0

0

0

0

0

0

0

12

7

Classical Swine Fever (7)

0

0

0

0

0

0

2

2

0

2

1

2

10

0

0

2

2

5

13

0

Contagious agalactia (7)

0

5

0

1

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

1

Coxiella burnetii (21)

0

11

12

2

0

0

4

3

0

5

0

0

0

0

0

0

0

1

15

0

E. coli (23)

0

0

0

1

0

0

99

90

0

3

3

0

18

0

0

4

8

1

51

22

Foot and Mouth Disease (14)

0

0

0

3

0

0

13

11

0

13

3

0

6

0

0

0

0

19

8

3

Hepatitis E (25)

0

17

94

2

0

0

2

2

0

36

29

1

25

0

0

0

0

7

32

1

Infectious Bovine Rhinotracheitis (14)

0

2

3

4

0

0

3

2

0

1

0

0

1

1

0

1

0

0

0

1

Multiple (5)

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

5

Paratuberculosis (28)

0

8

0

4

0

0

111

101

0

2

3

0

22

1

0

2

1

0

47

11

Peste des Petits Ruminants (9)

0

0

0

1

0

0

10

3

2

1

0

0

4

0

0

0

0

2

3

1

PRRS (26)

0

2

10

1

0

4

11

8

0

2

3

0

20

0

0

11

16

13

4

15

S. aureus (1)

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

1

Salmonella (23)

0

5

27

4

0

0

11

8

0

2

2

0

30

0

0

0

0

0

7

6

Swine Influenza (19)

0

4

8

2

0

0

6

2

0

16

10

0

2

0

0

0

0

16

43

0

Number of parametra entries by pathogen and year. The numbers in parentheses indicate the count of studies where these entries were collected. Total number of studies: 411

1995 (1)

1996 (2)

1998 (1)

2000 (5)

2001 (3)

2002 (8)

2003 (5)

2004 (8)

2005 (8)

2006 (7)

2007 (19)

2008 (14)

2009 (15)

2010 (13)

2011 (22)

2012 (21)

2013 (27)

2014 (24)

2015 (16)

2016 (11)

2017 (31)

2018 (18)

2019 (20)

2020 (30)

2021 (30)

2022 (28)

2023 (21)

2024 (2)

Not Available (1)

African Swine Fever (36)

0

0

0

0

0

0

0

0

0

0

0

0

0

0

1

0

11

0

5

0

53

0

2

10

74

19

11

0

0

Avian Influenza (68)

0

0

0

0

0

0

27

14

4

10

36

9

23

32

51

73

31

12

5

0

94

21

17

36

50

30

2

0

0

Bluetongue (4)

0

0

0

0

0

0

0

0

0

0

10

7

0

0

0

0

0

0

0

0

0

0

0

0

9

0

0

0

0

Bovine Respiratory Syncytial Virus (20)

0

1

0

2

0

0

0

0

0

0

2

4

15

1

0

2

1

0

2

0

0

5

0

0

5

0

1

0

0

Bovine Tuberculosis (26)

0

0

0

0

0

1

0

0

0

71

0

0

0

0

2

2

0

60

0

0

0

6

12

3

2

5

13

0

0

Bovine Viral Diarrhoea Virus (23)

0

0

0

0

0

0

1

0

5

0

5

0

0

0

3

0

4

1

4

0

9

5

0

1

3

0

0

6

0

Campylobacter (26)

0

0

0

0

2

0

2

0

2

0

2

0

2

0

1

5

1

5

0

3

3

0

33

1

6

1

0

0

2

Classical Swine Fever (7)

0

0

0

0

0

3

0

8

0

0

0

0

0

0

12

0

0

3

0

0

0

0

0

4

11

0

0

0

0

Contagious agalactia (7)

0

0

0

0

0

1

0

0

1

0

0

0

0

1

0

2

0

0

0

0

0

1

1

0

0

0

0

0

0

Coxiella burnetii (21)

0

0

0

0

0

0

0

0

0

0

5

0

4

2

12

1

10

1

0

1

6

6

0

4

0

1

0

0

0

E. coli (23)

1

0

0

0

0

0

0

5

4

12

23

20

0

1

6

0

0

4

0

6

9

0

39

4

0

15

151

0

0

Foot and Mouth Disease (14)

0

0

0

0

0

0

3

6

0

0

4

12

14

0

0

0

0

0

18

5

0

0

7

10

0

0

0

0

0

Hepatitis E (25)

0

0

0

0

0

0

0

0

0

0

0

67

0

5

2

78

9

4

1

0

29

0

1

3

45

1

3

0

0

Infectious Bovine Rhinotracheitis (14)

0

1

1

1

1

0

0

0

0

0

1

0

0

0

0

0

3

2

0

0

3

2

1

1

2

0

0

0

0

Multiple (5)

0

0

0

0

0

0

0

0

0

1

0

0

0

0

1

2

1

0

0

0

0

0

0

0

0

0

0

0

0

Paratuberculosis (28)

0

0

0

2

0

6

1

3

0

16

0

150

1

0

1

0

2

2

16

7

1

33

2

0

6

64

0

0

0

Peste des Petits Ruminants (9)

0

0

0

0

0

0

0

0

0

0

0

0

1

0

0

0

0

2

1

9

0

0

0

6

6

2

0

0

0

PRRS (26)

0

0

0

1

0

18

0

2

0

0

0

0

1

23

0

3

2

3

4

20

4

0

0

12

6

18

0

3

0

S. aureus (1)

0

0

0

0

0

0

0

0

0

0

0

0

0

0

1

0

0

0

0

0

0

0

0

0

0

0

0

0

0

Salmonella (23)

0

0

0

0

0

1

0

0

0

2

25

6

0

0

0

2

27

21

0

0

6

0

0

6

4

0

2

0

0

Swine Influenza (19)

0

0

0

0

0

0

0

4

0

0

0

0

2

2

23

0

17

12

0

9

6

11

0

5

5

1

12

0

0

Number of parametra entries by pathogen and study_type. The numbers in parentheses indicate the count of studies where these entries were collected. Total number of studies: 411

Experimental (24)

Experimental Field (14)

Experimental Isolator (1)

Experimental Lab (20)

Experimental Stable (32)

Field (50)

Observational (69)

Prevalence (1)

Retrospective (1)

Retrospective Cohort (1)

Seroprevalence (29)

Descriptive Review (18)

Meta-analysis (4)

Review (30)

Comparative (30)

Cross-sectional (1)

EU Report (1)

Faecal Culture (1)

Manufacturer Claim (3)

Prevalence (PCR) (1)

Questionairre (1)

Survey (54)

Systematic Review (2)

WOAH Technical Disease Card (1)

Other (15)

Not Available (50)

Experimental (89)

Field (150)

Review (50)

Other (109)

African Swine Fever (36)

9

0

0

3

3

0

36

0

0

0

0

3

0

77

19

0

0

0

0

0

0

0

0

0

0

36

Avian Influenza (68)

135

0

1

0

0

397

13

0

0

0

0

19

0

0

12

0

0

0

0

0

0

0

0

0

0

0

Bluetongue (4)

0

0

0

0

0

0

0

0

0

0

0

0

0

0

6

0

0

0

0

0

0

1

0

0

0

19

Bovine Respiratory Syncytial Virus (20)

1

0

0

2

3

0

19

0

0

0

9

0

0

2

4

0

0

0

0

0

0

1

0

0

0

0

Bovine Tuberculosis (26)

3

0

0

1

0

0

13

1

1

1

1

1

1

106

30

0

1

0

0

0

0

6

0

0

0

11

Bovine Viral Diarrhoea Virus (23)

0

0

0

3

1

0

0

0

0

0

7

0

1

6

0

2

0

0

0

0

1

0

0

0

7

19

Campylobacter (26)

0

0

0

0

8

0

7

0

0

0

0

1

0

1

5

0

0

0

2

0

0

16

0

0

0

31

Classical Swine Fever (7)

0

0

0

0

0

0

18

0

0

0

0

0

0

17

0

0

0

0

0

0

0

0

0

0

0

6

Contagious agalactia (7)

0

0

0

0

0

0

0

0

0

0

0

1

0

0

0

0

0

0

0

0

0

5

0

0

0

1

Coxiella burnetii (21)

0

6

0

1

0

0

16

0

0

0

10

0

0

4

0

0

0

0

0

0

0

9

0

0

0

7

E. coli (23)

142

40

0

1

43

0

4

0

0

0

0

0

11

3

39

0

0

0

0

0

0

0

0

0

17

0

Foot and Mouth Disease (14)

3

0

0

1

47

0

0

0

0

0

0

8

0

5

7

0

0

0

8

0

0

0

0

0

0

0

Hepatitis E (25)

0

0

0

1

7

0

66

0

0

0

3

1

0

58

2

0

0

0

2

0

0

83

0

0

0

25

Infectious Bovine Rhinotracheitis (14)

0

1

0

1

1

0

0

0

0

0

2

2

0

0

0

0

0

0

0

0

1

0

0

0

2

9

Multiple (5)

0

0

0

0

0

0

5

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

Paratuberculosis (28)

0

11

0

1

0

0

70

0

0

0

3

3

0

2

0

0

0

0

0

0

0

4

212

0

3

4

Peste des Petits Ruminants (9)

0

0

0

0

0

0

4

0

0

0

0

1

0

2

7

0

0

0

0

0

0

0

0

1

7

5

PRRS (26)

2

4

0

10

5

0

9

0

0

0

6

1

0

15

15

0

0

0

0

0

0

6

0

0

43

4

S. aureus (1)

0

0

0

0

0

0

1

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

Salmonella (23)

2

0

0

3

0

0

47

0

0

0

18

0

0

0

8

0

0

12

0

0

0

1

0

0

0

11

Swine Influenza (19)

7

18

0

2

38

0

31

0

0

0

0

0

3

2

0

0

0

0

0

1

0

3

0

0

0

4

Number of parametra entries by pathogen and model_type. The numbers in parentheses indicate the count of studies where these entries were collected. Total number of studies: 411

Annual Rate (1)

Descriptive (1)

Doubling Time (2)

Exponential Growth (2)

Final Size (7)

GLM (1)

Markov Chain (1)

Multiscale (1)

Nearest Neighbor (2)

Network Analysis (1)

Phylodynamic (1)

SEIR (3)

SI (7)

SIR (30)

SIRS (6)

SIS (4)

SLICE (1)

SLIR (32)

SOEI (1)

SUD (1)

Seasonal Matrix (1)

Stochastic (1)

Time Series (1)

White & Pagano (1)

Not Available (375)

African Swine Fever (36)

0

0

0

0

0

0

0

0

0

0

0

2

9

0

0

0

0

7

0

0

0

0

0

0

168

Avian Influenza (68)

0

0

2

13

26

0

0

0

3

0

3

0

0

84

48

0

0

159

0

0

0

0

4

9

226

Bluetongue (4)

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

26

Bovine Respiratory Syncytial Virus (20)

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

41

Bovine Tuberculosis (26)

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

4

5

0

0

0

0

0

168

Bovine Viral Diarrhoea Virus (23)

0

1

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

46

Campylobacter (26)

0

0

0

0

0

0

0

0

0

0

0

0

7

0

0

0

0

0

0

0

0

0

0

0

64

Classical Swine Fever (7)

0

0

0

0

0

0

0

0

0

0

0

3

11

0

0

0

0

0

0

0

0

0

0

0

27

Contagious agalactia (7)

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

7

Coxiella burnetii (21)

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

53

E. coli (23)

0

0

0

0

0

0

3

0

0

0

0

0

23

5

0

38

0

0

0

0

0

0

0

0

231

Foot and Mouth Disease (14)

0

0

0

0

1

6

0

0

0

0

0

0

0

8

0

0

0

0

0

0

0

0

0

0

64

Hepatitis E (25)

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

248

Infectious Bovine Rhinotracheitis (14)

0

0

0

0

0

0

0

0

0

0

0

0

0

1

0

0

0

1

0

0

0

0

0

0

17

Multiple (5)

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

5

Paratuberculosis (28)

2

0

0

0

0

0

0

1

0

0

0

0

6

0

0

0

30

4

0

0

0

8

0

0

262

Peste des Petits Ruminants (9)

0

0

0

0

0

0

0

0

0

0

0

5

0

0

0

0

0

0

0

0

1

0

0

0

21

PRRS (26)

0

0

0

0

0

0

0

0

0

2

0

0

0

3

23

0

0

0

0

3

0

0

0

0

89

S. aureus (1)

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

1

Salmonella (23)

0

0

0

0

0

0

0

0

0

0

0

0

0

10

28

0

0

0

0

0

0

0

0

0

64

Swine Influenza (19)

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

109